Reference

All functions
bed2matrix()	Convert a bed to a matrix
get.pc()	Get the principal component the most associated with a genetic marker
pcadapt()	Principal Component Analysis for outlier detection
plot(<pcadapt>)	pcadapt visualization tool
read.pcadapt()	File Converter
run.pcadapt()	Shiny app
writeBed()	Write PLINK files